Changes in the Lync Server Console get over written by the data currently in ActiveRoles Server once a day.
ActiveRoles Server is designed to be the data master in the entire Lync Server environment when using the Lync Server Addon for ActiveRoles Server. An update workflow in Quick Connect runs on a schedule to take all the data from ActiveRoles Server, find the differences and update Lync with the different data over writing the data on the Lync Server.
There is no workaround suggested. This behavior is by design.