Yes. By importing an Administrative Template into your AD Group Policy, you can configure the Mail Configuration settings to send an email to the user when a token is programmed through AD. These emails will include a QR code, as long as the "Send Messages as plain text" box is UNCHECKED.
Here is an excerpt from the Defender Admin Guide and I have also attached a screen shot.
Send message as plain text Select this check box if you want to send the e-mail messages containing token activation codes in a plain text format. Note, that plain text messages do not contain QR codes or links for token activation. If you want to include QR codes and links for token activation in a message, clear this check box. When this check box is cleared, the e-mail messages are sent in an HTML format
More Information can be found in Chapter 11 of the Defender Admin Guide under the Mail Configuration section.